PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01737.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 222aa    MW: 25457.2 Da    PI: 7.1926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01737.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-18449147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l+++v+++G+++W++Ia+++  gR++k+c++rw++ 
  Zmw_sc01737.1.g00010.1.am.mk  4 RGHWRPSEDEKLKELVTLYGPHNWNAIAEKLK-GRSGKSCRLRWFNQ 49
                                  899****************************9.***********996 PP

2Myb_DNA-binding51.81.8e-165699146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  r ++++eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zmw_sc01737.1.g00010.1.am.mk 56 RSPFSEEEEELLLASHRVHGNR-WAVIARFFP-GRTDNAVKNHWHV 99
                                  789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.452154IPR017930Myb domain
SMARTSM007171.0E-14352IPR001005SANT/Myb domain
PfamPF002498.1E-17449IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26557IPR009057Homeodomain-like
CDDcd001671.22E-13748No hitNo description
SMARTSM007174.1E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.73555105IPR017930Myb domain
PfamPF002499.2E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2058104IPR009057Homeodomain-like
CDDcd001674.95E-67198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVT LYGPHNWNAI AEKLKGRSGK SCRLRWFNQL DPRINRSPFS  60
EEEEELLLAS HRVHGNRWAV IARFFPGRTD NAVKNHWHVI MARRCRERAR MSNRPQCGAA  120
AGTTMENDNT CRNAKKPRPD DANCLASLVD KYRSEFTGPF AIGHDNTEKD RSTTNEEGTD  180
KSVEFYDFLQ VNATSSDTKC GSSIEDQDEN RDDQAEGHVQ FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3321055108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644561.11e-121PREDICTED: transcriptional activator Myb-like isoform X3
TrEMBLA0A060D7S31e-121A0A060D7S3_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G455869_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260